PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0618
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 343aa    MW: 36062.8 Da    PI: 5.2958
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0618genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.61.5e-24244306163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++L++el++l++e++kl+se+
  Gh_D12G0618 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQAKVESLANENHTLRDELKKLSDECEKLTSEN 306
                  89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.4E-29192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.2E-20239304No hitNo description
SMARTSM003387.1E-22244308IPR004827Basic-leucine zipper domain
PfamPF001704.9E-22244306IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346246309IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.63E-12247303No hitNo description
CDDcd147025.22E-24249299No hitNo description
PROSITE patternPS000360251266IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGTEEESTPA KPSKPTASSQ EMPTVSYPDW STQMQAYYGA AATPPLFAST VASPTPHPYI  60
WGGQHPLMPP YGTPVPYPAV YPPRGVYAHP NMAPMPSSAR NNGADGKDRG VTKKPKGSSG  120
SKVGESAKAT SGSGNDGGSQ SGESGSEGTS DRSDESNQQE VNAGKKGSFE QMLADANAQG  180
KAAGALVPAE PIVSMPATTL NIGMDLWSAS PAATGAPKTR PNASGPVATV PAGAVMPDQW  240
IQDERELKRQ KRKQSNRESA RRSRLRKQAE CEELQAKVES LANENHTLRD ELKKLSDECE  300
KLTSENSSIK DELMRICGPE AISNLEQGNP SPVGEAGGDE GNG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266RRSRLRK
2260267RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.22370.0boll| ovule
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436919.10.0PREDICTED: G-box-binding factor 1-like isoform X1
SwissprotP427741e-114GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0D2T1R00.0A0A0D2T1R0_G
STRINGPOPTR_0007s12460.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-96G-box binding factor 1